As I mentioned earlier, I have a MythTV computer, installed from packages, but I've broken some of the packages. Here are some of the issues that I had with the packages, and how I solved them.
Two of the package manager drawbacks I've mentioned previously appear here: the one-size-fits-all approach to software packaging, and the failure to receive timely updates.
The MythTV box is on old hardware. Because it has hardware assistance for both MPEG encoding and decoding, I didn't need a new computer with a fast CPU. The fact that this is old hardware, with a 7-year old BIOS, may be why I had problems, but I found it easier to break the packages than to try to solve the problems under the constraints of the package system.
First, the MythTV box controls an infra-red LED attached to its serial port, allowing it to change the channels on a digital cable box. This requires the use of the LIRC package, and the lirc_serial kernel module. Well, at the time I set this up, the lirc_serial module was having problems with the SMP kernel. The system would generate an oops quite regularly when it wanted to change channels. Looking at the oops logs, I could see that there were problems specifically with SMP. My MythTV box has only one CPU, so I didn't need an SMP kernel, but because some users will have SMP computers, the KnoppMyth distribution ships with an SMP kernel. I tried to find a non-SMP kernel for the system, without success. So, the easiest way to fix the problem was just to download a recent kernel source tree from kernel.org, copy the configuration file from the Knoppix kernel, and reconfigure it as non-SMP. The spontaneous reboots stopped occurring. The package manager still believes that it knows what kernel is running on the computer, but that isn't what is really installed.
When I installed the MythTV box, the software was still a bit immature, and a stability fix in the form of version 0.20 came out several months later. I waited a few weeks with no update to the distribution, and no word of when an update might become available. Eventually, I grew impatient and downloaded the source code of 0.20 myself, recompiled it on the MythTV box, and installed it over top of the existing programs.
There was one other impact of the one-size-fits-all approach that caused difficulties with the MythTV box. I was regularly recording a television show between 6:00AM and 6:30AM. A few minutes before the end of the show, the recording would have problems. The audio would break up, and the video would jump. It appeared that the program was losing frames of data, either because it was losing interrupts, or because it couldn't get the data to the disk quickly enough. Because it happened at about the same time every day, I expected it was probably a cron job. I got a root shell on the box, and asked for the list of all root-owned cron jobs with the command "crontab -l". This reported that there were no root-owned cron jobs. I mistrusted this result, and did more investigation. As I mentioned in the first post, distribution packagers often break up a configuration file into a set of separate files. They did that with cron jobs, which means that the command-line tool that ought to tell you all about root-owned cron jobs didn't report the full set of such processes. A bit of digging around in /etc showed that the slocate database update was being run at that time. This process scans the entire disk, making a list of the files on it. While probably useful in a general context, this is an unnecessary operation on an appliance box that isn't changing, particularly when it results in so much bus traffic that the primary function of the box is degraded. My solution was to change the /etc/crontab file (which is, itself, not viewed by "crontab -l") so that a cron job would be skipped if there were any users (reported by the 'fuser' command) of either of the two video input devices, /dev/video0 and /dev/video1.